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Howdy all,
The broad goal of this hackseq group is, "Inferring sex chromosome and autosomal ploidy in NGS data".
There are a lot of people thinking about this, and in preparation for our hack-a-th…
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What should we call the soon-to-be python package? _Pirates_ isn't terribly descriptive. Unless we can turn that into an acronym that makes some sort of sense, in which case I'd be very happy to keep …
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**Describe the bug**
Flowing the instructions, I chose the --keep-up 1 to callpeak with macs2 for bacterial ChIP-Seq data. But, it reported "Too few paired peaks So I can not build the model! ...". T…
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Hi everyone,
I use bamCoverage (bamCoverage version: 2.5.3, python version: 2.7.5) to convert sorted bam files to bigwig files for visualization in UCSC genome browser. It usually takes less than …
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Hi,
I'm trying to use the RVS code and am having difficulty with learning how to enter in the relevant sequencing data for the affected members of the pedigree. What would be the code for such a func…
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I’m finding the CellTag system very easy to use (thank you!), but have run into hopefully a few small but solvable problems.
**Pertinent information** – I am using the CellTag V2 library and perfor…
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Hi,
First of all, thank you for this wonderful tool.
I used CTAT_Mutations v3.2.0 in Conda environment and I am wondering why 'subprocess.CalledProcessError' is happening.
the command line is:
…
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### Description of bug
I am running metaSPADES on a co-assembly of 6 samples totalling 19gb raw reads given to metaSPADES. Despite this being a somewhat typical size of metagenomic dataset I get out …
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Hi Felix,
I used Sherman dev with the following command line:
```
${Sherman}/Sherman --length 100 --number_of_seqs 10000000 --genome_folder ${ws}/SimulateData/ref --paired_end --conversion_rate ${c…
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Hell Dashing2 developer,
Dashing can be use for genome derelication in nt format but I am wondering wither it is an option to have it also work for amino acid sequences (all gene of a genome in ami…