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Hi,
I tried trimming adapters using Dorado using the post-basecalling `bam` file using `dorado trim` but it ends in this error -
`Segmentation fault (core dumped).`
I tried Dorado versio…
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Hi,
I had en error message when I ran "BASALT -a assembly.fasta -l barcode89_filtlong.fastq --module autobinning"
Traceback (most recent call last):
File "/dss/dsshome1/lxc04/ge24yaf2/.conda/…
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Hello
I am using canu to assemble nanopore reads for a genome which is 830 Mb.
My canu command is
```
INFILE=barcode02
../canu/canu-2.2/bin/canu \
useGrid=true gridEngineResourceOption="…
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hello I have two questions
first the parameter--long-reads which have two fa 1&2 ,but the long reads from nanopore is only One end , so just put the one fa ?
second error , There are the following …
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Hi,
This is a very cool tool, so thank you very much. I have so far made a "dual assembly" (http://lh3.github.io/2021/10/10/introducing-dual-assembly) with Nanopore reads and have made input files…
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Hello,
I am attempting to simulate Nanopore reads with a mean length of 92Kbp for genomic sequencing. I attempt to run this with the quality score model, but I see that apparently the length cannot…
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- [ ] talk with Dr Sun to ensure the topic
- [ ] read papers about“ muti-omics analyze data from nanopore to classify prostate cancer and normal”
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I have NanoPlot v1.43, NanoStat 1.6.0, and Python 3.10.14
Previously, these two packages (either NanoPlot or NanoStat) worked well in Linux Ubuntu or MacIOS to count the quality of nanopore reads w…
HW411 updated
2 months ago
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Hi,
I am trying out dorado correct on a 100x coverage set of reads of a bacteria for de novo assembly (~1GB of data), and it just doesn't seem to run at all?
This is using the windows binary with…
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Dear developer:
we used the gnnome well in example data, but what we met the erro is we used the nanopore assemble from raven “raven --threads 100 sample.fastq.gz > sample.raven.contigs.fasta” and we…