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Currently, we do not check at the end of a run if no reads aligned. As a result, some people have been getting 0 reads mapping and 'nan' everywhere in their results. We should error, and give a helpfu…
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Hi Authors,
I was able to run TOGA on my couple of species, but somehow, after running for 11 hours, I got this error for one of my species in my sbatch error file.
After loading `nextflow` modu…
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Dear Devs,
I am running NextDenovo (v2.5.0) on a 2.4Gb mammalian genome using Nanopore data in Docker with Ubuntu 20.04.2 LTS and Python 3.10.6 in a Nextflow pipeline (allocated cpus = 16, memory =…
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I am having the following error when running What The Phage on Singularity with Slurm:
```
Caused by:
Failed to pull singularity image
command: singularity pull --name multifractal-metaphin…
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I have created a simple assembly pipeline that downloads _Streptococcus agalactiae_ reads from SRA by providing an accession number and processes reads in order to get assemblies that have passed cert…
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Here is the text for a GitHub issue based on the contents of the provided README file:
---
**Title: Issue with Running Bulk RNA-seq Pipeline on MSU HPCC**
**Description:**
I encountered an i…
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I have been trying to run the pipeline on a very large dataset (file sizes >25GB each), and I'm running into an error on the fastp step where it says:
`Process exceeds running time limit (1h)`
In th…
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Many academic collaborators don't have root access and therefore can't run docker. Since viash containerises everything, openproblems becomes entirely unusable if you can't run docker.
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### Have you checked the docs?
- [X] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [X] [nf-core modules documentation](https://nf-co.re/docs/contributing/modules)
### …
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## New feature
For rnasplice pipeline, I wanted to provide my previous salmon output as an input as suggested [here](https://nf-co.re/rnasplice/1.0.2/docs/usage#salmon-quantification-files)
So I…