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Hey,
I was running Braker3 and got an error at the Augustus gene calling step.
ERROR in file /DATA_RAID/mlobermeier/data/.snakemake/conda/37f04191d5c028db1d074ffa2a16db0c_/bin/braker.pl at line 7…
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# Issue Report
## Please describe the issue:
Gzip is, by far, the most commonly used format to compress sequencing data, including fastq files generated by your platform. gzip files are/were pro…
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Hi,
Could you provide us with information about how long and what memory and disk space the assembly for model species such as E coli, yeast, fruit fly and human take?
Cheers,
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Hi @cbertell @idfarbanecha I am getting the following Error when running `mess, version v0.2.1`
```
mess run -f config.yml -c 10
```
```
[2022-11-03 17:00 INFO] Executing: snakemake --snakefile…
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Hello,
I tried running Canu using the command
```
canu -p genome_773m_hf -d genome_773m_hf_assembly genomeSize=773m -pacbio-hifi sandai.fq.gz gridOptions=--partition=smp02 useGrid=true
```
…
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I was using isONclust in parallel as a previous step to define a transcriptome using ONT data with isONform. I looked at the memory profiling of isONclust and after a few minutes, when almost reaching…
eprdz updated
7 months ago
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Does `tigmint-make tigmint-long` support FASTQ reads from other platforms than 10x genomics chromium?
```
$ bash -x tigmint.sh SCRATCH=/scratch/mmokrejs/job_3024675.cerit-pbs.cerit-sc.cz TMPDIR=/s…
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Hi, there.
I have used the EVM model to combine lots of data to the annotation of a genome. I checked some results from the EVM results with the IGV. As shown in the picture, I confused about the…
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Hi PacBio experts,
I'm using pbfusion with the following command:
pbfusion discover --gtf gencode.v39.annotation.sorted.gtf --output-prefix test --threads 20 test.mapped.bam
However, I noticed that…
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Describe the issue:
We are currently using two different long-read sequencing systems: PacBio Direct and PacBio Capture.
We are encountering two specific issues:
1. **PacBio Direct Data (top t…