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Hello @hasindu2008,
Thank you for developing slow5tools - it's been really useful to compress and store ONT data!
Apologies if this is a naïve question but I thought it was possible to basecall …
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Hi Baoxing,
Nice to meet you. I am Yutang, a doctoral student studying forage grass at ETH-Zurich. I think leveraging gene collinearity for whole genome alignment is definitely a wonderful idea, es…
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*Re-posting here as a new issue in case you don't get notifications about comments on closed issues
Hey there! I know this is a closed issue, but I'm having the exact same problem. My run completes…
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Hi, I tried running one DIA raw file with DIA_DIA-Umpire_SpecLib_Quant and got the error below.
I processed the file with Spectronaut and it completed fine.
Thanks,
Yishai
Info: 31 redundant …
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I like that SNPs are represented on a linear scale even on log plots (because, for example, it's really confusing to see a SNP at 50% frequency that is almost at the top of a graph), but the total gra…
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Hi, I tried magic-blast to align a toy cDNA to a toy genome, I could either produce alignment of whole sequence (in blue) or the first exon only (in red).
Commands used to produce results
1. **Onl…
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hi, @davidemms
how the species tree generated in orthofinder ? using Super-tree way based on all gene trees or Super-matrix way based on concatenating single-copy orthologroup alignments to infer…
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I'm constantly getting a "Gateway time out" error when I try to access http://labshare.cshl.edu/shares/gingeraslab/www-data/dobin/STAR/STARgenomes/
Is there anyone else having the same problem?
…
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Cactus is a reference-free whole-genome multiple alignment program.
Repository: https://github.com/ComparativeGenomicsToolkit/cactus
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We have roughly 500k GO Annotation edges that aren't making it into the final KG because we aren't yet ingesting [Aspergillus nidulans](https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=In…