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Hi there,
I am working with the spectral flow data from Cytek Aurora. I am trying to figure out how to specify a cofactor of 150 for arcsinh transformation in the transformList() function. Any sugg…
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@jfrelinger
Nice paper, thanks! Since I am not a domain expert, just a few editorial comments:
- "few opensource tool" -> tools
- Introduction contains quite a bit of jargon ("monoclonal antibodies …
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> On 09/27/2017 09:39 AM, Tyler Burns wrote:
> Mike,
>
> When I try to run CyTOF data through CytoML, I get the following error, upon running GatingSet2Cytobank():
>
> "Error in export_comp_tr…
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Thanks for developing the easy use software!
We found the genome size estimate of our arthropod assembly was quite dependent the max k-mer coverage . The genome size is 30% larger after increasing…
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I was wondering if parade was able to process quite easily histo cytometry application (with dataset for different condition/activation on Omero) if the segmentation results is given as mask (to ext…
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In the docs, there is just half a sentence under "User interface - Analysis view" where the compensation matrix for crosstalk is mentioned, yet there is no explanation on how to use it or how it works…
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I de-convoluted 12 bulk RNA seq samples of brains from mice subjected to stroke. Each brain was separated into two hemispheres (Ipsilateral where ischemia took place and we expect neuronal death and …
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Hello,
I am looking for some advice on how to run findGSE and how to interpret the data when dealing with heterozygosity and plant genomes.
I summarized the runs on 4 species in this file:
[FindGSE…
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Hi there,
Thanks again for the tool.
I have 1 FCS that was acquired by the Aurora and 1 FCS that was acquired by Fortessa with much less number of markers. I aim to use the Aurora dataset to an…
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Hi! I am using the software to analyze whole-slide images, and my images contained around 70K+ spots/patches. When I used the `ath.graph.build_graph` function to built a radius graph, the process was …