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Is there any information on the performance/ability of VirSorter to detect signatures of eukaryotic viruses in environmental datasets? I've been playing a bit with the software but the output appears …
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I am using diamond, when executing the command line I can run the program normally, but I would like to obtain the taxonomy, follow the instructions of the manual but an error message always appears …
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### Description of bug
When trying to assemble DNA viral samples using the flags `--metaviral` and `--iontorrent`, spades won't generate any contigs, even when running with positive controls which …
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Hi Linxing,
I processed 614 viral contigs along with their corresponding metagenomes using COBRA with the following command:
`cobra-meta -f metagenome.fasta -q query.fasta -o query.fasta.COBRA.out…
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Hi!
I am using DeepVirFinder to test RNA-seq experiments for virus discovery. But when I try calculate the q value, using both my dataset and the CRC_meta test, appears the following error?
Error …
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Hello,
I am trying to use megahit as part of a larger analysis pipeline, and have encountered a strange behavior. I produced a test set using the following steps:
1. Extracted a 1M genomic sequence …
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Just wondering if you have any tips for making your own database. Specifically can you use a multifasta file with different species and strains to make the database or are you better off using individ…
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I am using the latest version of bwa-mem2 (2.2.1) and I indexed the database VirRefSeq_and_Virsorted_Tara_10kb.fasta (available at: /iplant/home/shared/iVirus/ExampleData/BowtieBatch/Inputs. The prefi…
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I am currently trying to run the demo with MetaPhage-0.3.3, I ran into a problem when executing the pipeline
```
Step 5 : /home/jm2338/miniconda3/envs/metaphage/bin/Scripts/Step_5_get_phage…
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I'm facing an issue while using Diamond (version X.X.X) to create a database using the "refseq_AA_13_4_23.fasta" file and the taxonomy mapping file "prot.accession2taxid.FULL". The database creation p…