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Hi
I'm using vg version v1.40.0 "Suardi".
I'm trying to run vg construct to embed variants into the graph, but it appears that TBI indexing is only used and not CSI. My genome can not be indexed…
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Hi !
Do you think there is a possiblity to choose the order in which the genomic regions are plotted ? Like for example in the order in which they are selected ?
In the screenshot below, you c…
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**Motivation**: There are many steps within _breseq_ that could be easily parallelized to speed up execution.
**Implementation**: Use a thread pool that relies only on C++11 std:thread to maximize …
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Hello,
May I sort the dot plot graph by the name of chromosomes from the genome reference?
thank you!
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Hi. I'm trying to run 84 genomes through micropan. I'm getting an error that must be related to the number of genomes, but wanted to run it past you. Any ideas for a fix other than reducing the genome…
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I get empty output gaf files when aligning reads to genome graphs. How do I resolve this issue?
Data:
[vg_toy_x.zip](https://github.com/lh3/minigraph/files/10886648/vg_toy_x.zip)
Command:
minigr…
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I was wondering if interchromosomal translocations can be included in the graph genome generated by cactus. Thank you for your response!
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#### Summary:
We need a way to generate benchmark test data to ensure consistency and accuracy of `pyani` output.
#### Description:
The initial plan is to take a single genome sequence as input (…
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I have a homozygous plant sepceis (estimatic size 1.1G).
First, I run hifi read (33G) with hifiasm-0.16.1/hifiasm -o out.fasta -t 16 -l0 input.fasta. I get 1.8G p_ctg (N50 2.3M, not very good), 158…
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**Motivation:** It would be very useful to have a script that can take many runs and create a dashboard for evaluating and comparing their quality/coverage.
It might:
- Generate a spreadsheet/tab…