-
Command:
```
straingst run --iterations 5 \
--minfrac 0.01 --separate-output \
-o NTC_taxid-1472416 \
1472416.hdf5 NTC.hdf5
```
Error:
```
Command error:
2023-04-10 23:45:…
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Is there any plans to include the addition of single end reads? I have several paired end libraries and additional single end libraries of the same metagenomes. It will be nice to see how your algorit…
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Cobra is an interesting software, but I have some questions. Is the input data must be viral metagenome data? I'm not sure if cobra could works for common metagenome data and will cobra produce some b…
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Hi, sean! Recently, I read your article 'Thousands of previously unknown phages discovered in whole-community human gut metagenomes'. And I am very curious about the phylogeny method in the article an…
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over in In https://github.com/sourmash-bio/sourmash_plugin_branchwater/pull/213, I tried to describe standalone manifests and their benefits for lazy loading. I wrote:
>
> There are various pla…
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Hi,
I get an error when trying to combine several OTU tables to one.
This command ran successfully:
for i in *.profile.tsv
do
name=$(basename $i profile.tsv)
singlem summarise --input-taxonom…
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Per default racon and medaka (pilon) are run 1x.
A sensitive mode could do
4x racon
1x medaka
2x pilon
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## The need
Get the relative abundance of MAGs across samples. We have a lot of confusion (rightfully in my opinion) within the anvi'o community about the abundance numbers in the summary output.
…
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Hi,
I want to analyse paired microbiome and metabolome data to find the microbiome-metabolome relationship.
However, I got this error -
" Error: No overlap between predicted and measured metaboli…
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## Curated
+ HumanMetagenomeDB
+ Description: HumanMetagenomeDB version 1.0 contains metadata of 69 822 metagenomes. We standardized 203 attributes, based on standardized ontologies, describing …