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Hi all,
I have got an error when I run merge_warpper.py. Can anyone suggest how to fix the following error?
I used the following script.
/home/tg484/quickmerge/merge_wrapper.py -p Dbia_merge_w…
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Hello MaSuRCA team,
I used MaSuRCA (version: MaSuRCA-3.2.7) to de novo assemble Brassica genomes. However, I meet the following error messeage:
Running locally in 1 batch
compute_psa 2044593 5215…
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Is there support for Python3.7+? I am trying to install ariba into my conda environment following the guide on [this page](https://anaconda.org/bioconda/ariba). I tried using the first command there w…
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Dear all,
I ran the test files and work perfectly. When I ran my own data, I have a problem with the Strain clustering and assembly step. I have this problem
*** End window construction
Invalid…
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Hello,
I am wondering if nucmer will align genomes with degenerate bases (e.g. W, Y, R, ...) and if in show-snps there is a way to visualize SNPs from such an alignment (e.g. tgcagtta to tgYagtta h…
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I'm seeming to run into trouble with the bed file. Could we get an example for what is expected in the bed file? Is it simply the chromosome name the start BP (1) and then the length of said chromosom…
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Hi,
I was trying your tool from MUMer outp (delta file) to get all SNPs and gap between two genome.
here you have the command line that I used
```bash
nucdiff $inputREFfasta $inputQueryFas…
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Dear all：
I want to identify variation between two similar genome, but when I use Mummer4 it use almost more than 1000Gb RAM, our linux server can't run with it, the larger one genome size is abo…
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I'm trying mummer4 (4.0.0.beta2), but I'm running into a problem with promer.
$ promer --mum reference.fasta query.fasta
1: PREPARING DATA
2,3: RUNNING mummer AND CREATING CLUSTERS
4: FINISHING …
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Hello professor:
When I use the lastz to get *_lastz.txt file using
`lastz *.genomic.fa[multiple] *.genomic.fa[multiple] --chain --format=general:name1,strand1,start1,end1,name2,strand2,start2,end…