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Hi Nava,
I'm Roden Luo from the Gu Lab at University of Washington. We are developing a technology to detect protein-protein interactions via next generation DNA sequencing. I found your work, swif…
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I have identified an important frameshift variant in TP53 using whole genome DNA sequencing and Strelka2 variant calling and Bowtie2 mapping. I wanted to see if it was identified in matched RNA sequen…
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**Supervisor:** Bérénice Batut
**For degree:** Master
**Status:** In progress
**Keywords:** Python
# Global context
Over the last years public media is reporting more and more about scientifi…
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It would be very useful to report the total number of reads alinged to viral genomes and the fraction of reads aligned to each viral genome with respect to the total number of reads in a sample.
The…
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editor preferred term: Illumina MiSeq Dx
alternative terms: MiSeq Dx
textual definition: The first FDA-cleared next-generation sequencing system for in vitro diagnostic use.
definition source for t…
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Hello,
After running your software, I noticed that some beads were classified as originating from the same cell. Could you please explain how this determination is made? Specifically, I'm curious a…
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Hello,
I would like to assemble chloroplastic DNA using Fast-Plast.
Unfortunately, the process stops after providing 2-Bowtie_index.
Actually, the process is stopped with this error message :…
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Hi,
I am working on a sequencing run that was created with Gridion. The basecalling option was enabled in MinKNOW during sequencing.
Recently I tried to re-basecall the run using dorado version …
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Hi all, thank you very much for writing this R package !
I was wondering whether your package can be use (and if that is possible, how it should be used) when two markers are used within the same b…
mxdub updated
3 years ago
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Hello, the ENCODE project has another NTR request for an assay that we will need to annotate a number of experiments.
**editor preferred term:** Split-pool recognition of interactions by tag extens…