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### Background
As additional validation step we can check how many of predicted viral sequences we can blast in a database of viral sequences including metagenomes: https://img.jgi.doe.gov/vr/
###…
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the STUDY (alias) should be the same for every assembly being uploaded to the same project. You will also need to generate a project.xml file which looks something like this:
```
E…
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I was able to run `nextflow run hello -with-tower` successfully, but then when I tried to use `-with-tower` on a pipeline of interest, I ran into the error:
```
N E X T F L O W ~ version 19.09.0…
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Nothing important for now, but I was curious and just threw some Nanopore reads into the workflow, MARVEL reported:
````
Error executing process > 'marvel_wf:marvel (1)'
Caused by:
Failed to…
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Hi,
I have recently sequenced some metagenomic samples on MinION and now I am trying to assemble the data using Flye --meta option. This has worked for me previously on some samples but now it says…
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#### I'm trying to do following to assemble a diatom:
(1) Kneaddata/Trimmomatic for my transcript reads;
(2) Mapping the reads to my unmasked genomes;
(3) Using RNA-Spades for the transcript as…
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Hi Alexander,
I just ran into an issue when using mapDirectly with my custom database.
The last lines of output are:
```
Added C3600|kraken:taxid|185218|NC_012519.1 with length 7781; est. memo…
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The idea would be to have a specific command for downloading genomes from NCBI
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Sometimes Travis fails, sometimes it succeeds, on this particular part of the test suite. Probably some race condition as xdist parallelizes the tests.
Mysteries include:
- Why is the existence o…
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Currently, DADA2 requires equal length amplicons for input. Is there any chance that variable length sequences will be possible in future updates of DADA? I often work with fungal ITS data and would l…