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When I try to index (-k 21) a fasta file in which each read (length 21) corresponds to a kmer, I get the following error
```
[DSK: nb solid kmers: 0 ]
EXCEPTION: This dataset has…
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I am running `kat gcp` using Snakemake on a cluster and have run into a problem upon what seems to be the completion of the `kat gcp` command.
I am running:
```
rule kat_rawRead_gcp:
params…
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Large kmers help to sort out strain variants thus using a k of 51 with sourmash or kraken may be the best way to go.
### Expected behavior
### Actual behavior
### Steps to reproduce the …
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Hi Jellyfish group,
I am trying to use jellyfish to generate kmer for a complete genome (~14G). I accidentally found some kmers should be in the genome but are not showing in the final txt file aft…
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Hello, in my project I would like to just calculate the kmer counts for one side of the reads, read_1.fq.gz, for example.
And then afterwards, I would like to compare kmer.dump across samples, I wou…
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The current definition is vague.
```
--db NAME Name for Kraken 2 DB
(default: none)
```
If I downloaded and extracted the following database, what valu…
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Hello,
I'm trying BASALT with a subset of my data. It looked to work fine until the step as follows that failed with the error in the title.
```
===== Mismatch correction scaffolds finished.
…
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CC @camilogarciabotero, ref. #297
How would a user go about findings ORFs with BioSequences? To do this, they need to be able to do several fundamental operations that BioSequences currently doesn…
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The `_shred` method returns a ordered list of kmer IDs. Assert two subsequent kmers in the list are neighborly (share a k-1 mer in common) or else do not increment that edge (it mustn't exist)
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Hi!
I'm a computer engineering student and I'm doing my master thesis on improving UST basically (see [here](https://github.com/enricorox/USTAR) if interested).
I wrote a simple C++ program that e…