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[metaviralSPAdes: assembly of viruses from metagenomic data](https://pubmed.ncbi.nlm.nih.gov/32413137/)
> MOTIVATION: Although the set of currently known viruses has been steadily expanding, only a …
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### Description of bug
I have an error on Spades 3.15.5 downloaded and installed as Binary from here (GitHub Releases). It is the same issue as reported in #1267. Unfortunately, it is marked as "outd…
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1) spend more time on last 3 days and less on processing raw reads
differential isoform analysis?
minimum # reads per cell
umi-counting with kallisto how to aggregate umis from transcripts to genes…
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How exactly does COMPSRA determine if a read maps to a circRNA? Does it specifically consider only reads that map to the splice junction? Otherwise, reads from linear mRNAs that map to an exonic seque…
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I tried to use `as.matrix()` to change a `IterableMatrix` into a normal matrix or `dgCMatrix`, the matrix is huge but smaller than 2^31 so it shouldn't exceed the dgCMatrix limit, but I still got an e…
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Hi, I'm runing the eNet for my own data, but the GPTab is NULL and without any error message:
Bellow is my code:
```
cre.mat
jphe updated
10 months ago
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Hi all again,
cc: @ThomasDesvignes @mhalushka @mlhack @keilbeck @BastianFromm @ivlachos @TJU-CMC
After giving some time to think, I realized we could ask slightly different for a solution the n…
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[The galaxy Diffbind tool](https://github.com/galaxyproject/tools-iuc/blob/master/tools/diffbind/diffbind.xml) doesn't seem to have an option to use EdgeR instead of DESeq2 underneath. The galaxy Diff…
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Hello,
Is it possible to subset a pegasus h5ad file using a list of barcodes?
Thanks,
Yoav.
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Hello everybody,
I'm currently testing Oases on our RNA-Seq data (approx. 40 – 80 million paired–end Illumina reads with 150 bp length) and for some reason velvetg tries to allocate huge amounts of…