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I've noticed in certain cases the Assembly.assemble_linear() method can produce misannotated sequences, specifically it seems to shift the annotations along the sequence, so they have the same length,…
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Related to #716
## Expected Behavior
a) Value from format field should not be modified and
b) "formats may be tested by exact match"
c) ` format: [gz]` in job file and `format: [gz]` in tool/…
wilke updated
6 years ago
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I am struggling to completely understand the differences of the outputs in AA and AC and how to translate this to presenting the results of the analysis:
If I have an individual sample which appears …
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Dear Maintainers,
I got this error when trying to run ampliconsuite inside nextflow, so I am unsure if this occurs because of nextflow or maybe the issue arises on your side.
I also tested the con…
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### Description of the bug
Hi!
I'm running the pipeline with the following pipeline:
```
nextflow run nf-core/circdna \
-r 1.0.4 \
-profile docker \
-resume \
--max_cpus 9 \
--max_memory …
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Hello,
I have another question, are you planning to include more databases in your tool, e.g. UNITE and Silva?
Cheers,
Dominika
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Hello,
I was attempting to use the WGS-whole-region-deleted branch of of CRISPResso2 because I have some cas12-edit nanopore amplicon reads which are 1000bp in length and have frequent 150bp deleti…
mbosm updated
1 month ago
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Hi @jluebeck ,
I have three questions regarding the classification of the amplicon.
1. There are some differences (see image below) between the current version and the legacy_natgen_2020 (from t…
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Hi @joybio thank you for your package.
In the results folder of multiPrime for the CDS test data, there are two final max forward and reverse primer from just one cluster.
Is it expected that the …
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I am new to metcat and attempting to assemble amplicon based sequence reads for a virus genome. I am wondering on the set of optimal parameters for a 16000 long genome with 1500-2500 long amplicon seq…