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Are we suppose to compile this data ourselves? fetch_ena.py seems to generate this data, but fetch_ncbi.py does not.
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Hi,
Thanks for the useful tool. I would like to request a new feature/option to come into play when using `fastp` for deduplication. It would be useful if the IDs of duplicate reads could be saved …
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Thank you very much for your great work.
We are going to perform metagenomic analyses by 16S using human tissue samples. I would like to make sure about "DNA quantitation data". Is this "pre-PCR co…
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## Short description of the problem
Anvi'o told me that my internal genomes all have the same hash and won't accept the flag it suggested to use to overcome that.
## anvi'o version
Anvi'o ...…
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Hi,
When I run DeepVirFinder using multiIcores (e.g. 72 cores), I'm encountering warning messages like below. DeepVirFinder seems to be getting slower with these messages and use only
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@danielhhaft we've been reviewing [Identification of 76 novel B1 metallo-β-lactamases through large-scale screening of genomic and metagenomic data](https://pubmed.ncbi.nlm.nih.gov/29020980/). The aut…
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Briefly comment on this issue why you'd be interested in this project.
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Hey all,
I have metagenomics data from several samples, from which I want to fish out only 16S reads.
I thought about using kraken2 to match reads to the silva database and only keep classified read…
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I used Kraken2+Bracken to quantify the composition of microbes in my metagenomic data with pre-build database (PlusPF). However, I found there are more than 1000+ reads were assigned to species A. Aft…
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Hi,
I am trying to use graftM for the first time. I have paired-end shotgun metagenomic data for 8 samples.
1) Should I submit my qc'd reads or refined bins as input to build a phylogenetic tr…