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The term 'embryo' has very different meanings in different species. We currently use embryo phenotype to cover all of the prenatal period. The definition I created for embryo phenotype reflects this b…
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![genotype](https://user-images.githubusercontent.com/11581207/174497534-0b373243-affa-4ec6-9b3f-c201ee7fbe24.png)
![anthropod_genotype6ru](https://user-images.githubusercontent.com/11581207/12394867…
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Currently we have some phenotypes (such as Alzheimer's) under phenotypes, but other phenotypes are in their own separate category (such as PD or stroke). We may want to make that consistent.
We als…
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Hi, I would like to ask what to do if I have missing phenotype values? What does the phenotype file use to represent, is it NA or 0 or is it empty?
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when plink .fam file has sex phenotype, .nosex is not generated which causes an error because .nosex is always expected as an output
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To start sorting out the disease vs phenotype business, we suggest the following plan:
1. Update our HPO - Mondo mapping by running the OAK lexmatch matching pipeline to HPO.
2. Implement a review…
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https://github.com/pombase/curation/issues/851
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To Whom It May Concern,
thanks for your effort in the development of leafcutter. It's really a helpful tool.
I used `leafcutter_cluster_regtools_py3.py` to get intron clustering.
I wonder if…
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We need to map the following terms the NCI thesaurus or the appropriate ontology, or create new ones as needed:
decreased sensitivity
detrimental effect
increased benefit
no response
no sensitivity
r…
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Hi Richard,
I've just tried running the phenotype generation script using the examples you provided in the manual and got the following error.
Do you think you could help pointing out where/how…