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https://doi.org/10.1101/390153
> A fundamental problem in biomedical research is the low number of observations available, mostly due to a lack of available biosamples, prohibitive costs, or ethica…
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Thanks for using our 3D RNA-seq App.
**Describe the bug**
I tried shiny app in both local and docker web version. https://3drnaseq.hutton.ac.uk/app_direct/3DRNAseq/
The app hangs when I perform tim…
apn83 updated
4 years ago
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1) spend more time on last 3 days and less on processing raw reads
differential isoform analysis?
minimum # reads per cell
umi-counting with kallisto how to aggregate umis from transcripts to genes…
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I just want to start a monocle analysis on a time-course single-cell RNA-seq data set. Wondering at the current stage, monocle 2 or 3 is more recommended. Many thanks for any suggestions.
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Let's use this issue to track example papers to use as references in class. Ideally this will include:
- authors from the FH community
- exhibit reproducible methods
- different model systems (huma…
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### Name of the tool
cuffnorm
### Tool homepage
http://cole-trapnell-lab.github.io/cufflinks/
### Tool description
normalize the expression levels from a set of RNA-Seq libraries.
### Tool outpu…
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Hi @alexdobin
Thanks again for writing & maintaining STAR. The latest diploid mapping feature is very cool. I was wondering how difficult you think it would be to extend it even further, to map to …
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Hi there,
I'm trying to install bcbio mm10 genome data for RNAseq and ATACseq analysis, but I noticed that several previous issues mentioned there might be some errors when downloading the mirbase. S…
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Dear author,
It's amazing that RiboTaper has his github site.
I had been using RiboTaper for Ribo-seq analysis. But I had suffer a error and had no idea how to solve it.
**Error informatio…
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I am trying to do an GOenrichment for my RNA-Seq (Arabidopsis) and am having trouble with the application in DEBrowser.
In the online version, I get an error that I am missing package org.At.tair(). …