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Hi,
I have question. Is there a way to get the Target Motif from ID/Name.
I just downloaded gff3 created with RepeatMasker and published by a team on new version of the genome of Chlamydomonas (v6…
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Dear Professor,
Nice to meet you!
I'm sorry to bother you!
I'm very interested in xtea, the software you developed.I want to use it to identify transposable elements using bgiseq-…
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**Are you using the latest release?**
Yes, from Docker: `singularity pull funannotate.sif docker://nextgenusfs/funannotate:latest`
**Describe the bug**
I just ran the funnannotate test using Sing…
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Hi Clement. The owner of the server/cluster did update singularity. I am using version v. 3.5.3. Not sure if installed well and the error message is related to dnaPipeTE.py this time. I checked for in…
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Dear Oliver Tam,
Thank you for providing very useful software.
I used TEcount to generate count tables for each sample, and then raw counts of all samples were merged together. After TPM/VST…
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I am wondering if this is normal BRAKER2 (v 2.1.4) behavior.
I had reason to run it multiple times using the same inputs and parameters (it was run in the mode that uses RNA seq and protein ev…
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Ported this over from a discussion thread
We could make a way to show the sequence for other feature types
### Discussed in https://github.com/GMOD/jbrowse-components/discussions/2514
O…
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Hi all,
Just update the testing result. It seems that new release TIR can close this issue.
1. Please install a new env for the EDTA 20190802 release
2. Follow the step by the Shujun provided.
…
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Discussing with @hattrill
- [x] GO:0034587 piRNA metabolic process and GO:1990511 piRNA biosynthetic process seem to have been used interchangeably to mean 'piRNA processing' - we need to review …
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@malloryfreeberg Hi Mallory,
It's not clear from https://github.com/galaxyproject/training-material/blame/50518e9db648d8ac77ea7ab34f9caf595a78621b/topics/transcriptomics/tutorials/srna/tutorial.md#…