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Hi,
I am using GRiD to evaluate growth rates of metagenome assembled genomes in multiple samples, metagenomic sequencing depth for samples varies a lot, so I am wondering whether should I subset al…
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Is there a way to start the analysis after ORF calling step?
If doing ORF calling with prodigal, does it use the "-c" option, I'm asking since it is not recommended for meta-genomics data.
As for th…
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Hi,
I'm trying to run FOCUS on an assembled metagenome reads.
I am getting the following exception:
```
[2020-02-13 06:16:20,955 - INFO] FOCUS: An Agile Profiler for Metagenomic Data
[2020-…
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**Submitting author:** @akrinos (Arianna Krinos)
**Repository:** https://github.com/AlexanderLabWHOI/EUKulele
**Version:** v1.0.0
**Editor:** @will-rowe
**Reviewers:** @johanneswerner, @jcmcnch
**Man…
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**Submitting author:** @akrinos (Arianna Krinos)
**Repository:** https://github.com/AlexanderLabWHOI/EUKulele
**Version:** v1.0.2b
**Editor:** @will-rowe
**Reviewer:** @johanneswerner, @jcmcnch
**Arch…
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Hi,
I'm using AMBER to evaluate a set of bins I obtained from a metagenome assembled from the CAMI Toy Mouse Gut Dataset reads. I've noticed that some bins have `nan` values in the Purity (bp) and …
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Hello,
I installed dRep as explained in the [installation guide](https://drep.readthedocs.io/en/latest/installation.html) on openSUSE leap 15.1.
When running `dRep compare_wf analysis/ -g ./geno…
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* [CheckV](https://bitbucket.org/berkeleylab/checkv/src/master/)
* fully automated command-line pipeline for assessing the quality of metagenome-assembled viral genomes, including identification of…
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Hello,
I am using sourmash to de-duplicate metagenome-assembled genomes. I tried the tutorial at http://sourmash.readthedocs.io/en/latest/tutorials.html#compare-many-signatures-and-build-a-tree and…
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There is overlap in the functionality for calculating stats and for indexing projects in elastic search. Both map ontology urls to titles.
With [elastic search aggregates](https://www.elastic.co/gu…