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Hi,
Im getting a DADA2 error message when running lotus2 (DADA2 + lambda) on some paired reads. Ive pasted some of the log output below. One thing I noticed was that pair2 is being trimmed at a ver…
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The runner script seems to need a script named `/stornext/snfs2/can/code/jython/jython-2.7.0/bin/jython -J-Xmx15g /hgsc_software/cancer-analysis/halotron/illumina/illumina_v0.0.2/halotron/illumina/ann…
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(a.k.a custom hints or custom requirements)
- [ ] Seven Bridge
- [ ] main: https://github.com/rabix/bunny/wiki/CWL-draft-2-extensions
- [ ] https://docs.sevenbridges.com/docs/list-of-executio…
mr-c updated
8 months ago
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Hello! My nf-core/viralrecon run was halted due to R version clash. Please see the error message below -
ERROR ~ Error executing process > 'NFCORE_VIRALRECON:ILLUMINA:PLOT_MOSDEPTH_REGIONS_AMPLICON…
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Hello,
I submitted velveth.sh on an HPC cluster at my university. I have installed velvet version "velvet-1.2.10". I ran velveth.sh with the following code:
`velveth OutputKmer119 119 -shortPaired…
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### Description of feature
Future plans for demultiplex workflow:
Attempt to convert into atomic subworkflows:
1. wrap different demux strategies into subworkflows:
- demultiplex_illumina (`bcl-…
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Show data capabilities to a user based on a user's workgroups
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Dear Mark,
Validation seems to fail for Mouse dRNA ONT + cDNA Illumina (long_short) submission.
When a single Mouse ES sample is provided in the entry.json, the following message is reported:
`…
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### Description of the bug
The pipeline ends with error with ~120 samples:
` A USER ERROR has occurred: Bad input: Filtering removed all intervals. Select less strict filtering criteria.
`
H…
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Hello,
I have an issue with the FASTA format. It is a FASTA format which was made from the Illumina Sequencing and annotated with KREGG. We have tried a first time wihtout Uniprot annotation and i…