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Hi people,
I hope this is the right place to ask my question. If not, than please let me know an alternative. :)
I am kind of new in the world of whole genome alignments. I wanted to create a s…
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Thank you for providing an excellent tool. I have been using it for genome assembly work. Hifiasm has consistently provided us with assembly results.
But in my recent work, we only obtained less than…
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Some inspiration from Genome Browser:
![f1 large](https://cloud.githubusercontent.com/assets/7809/10230476/3820522e-684b-11e5-93a2-c29f31225765.jpg)
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Obviously syntactic validation could be done at the level of RDF tools.
Previous discussion on use of shex/shacl for defining shapes: #30
OWL reasoning (potentially incorporating SWRL) is anothe…
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Hi,
I am trying to use genomescope to estimate heterozygosity and genome size of a fairly large plant genome, ~ 3.65Gbp. I am using the histogram of canu-corrected reads. Here is what I am getting:…
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Could someone please help with the error?
snakemake --snakefile /home/snp/odp/scripts/odp -c1
Building DAG of jobs...
InputFunctionException in rule hmm_1_against_prots in file /home/snp/odp/script…
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Hi,
I'm using wtdbg2 v2.5 on a 3G genome with about 60x PacBio Sequel CLR data and chose `-x preset3` for large genomes. Kmer counting was done in 90 minutes with 60 threads. The overlap stage is r…
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I have just used cactus minigraph to align 10 ~ 1.1 Gb genomes with the commands:
```
cactus-minigraph \
./jobstore \
../genome_seq_file.txt \
${prefix}.sv.gfa \
--reference $r…
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I appreciate your developing a fast and good assembler and following up the issues here. We are currently working on animal genomes of >4Gb with high abundance (>60%) of repetitive elements.
Here …
sighe updated
3 years ago
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I know there has been a thread about this in the past: https://github.com/trinityrnaseq/trinityrnaseq/issues/1231
but there seems to me to be an issue that isn't clearly resolved or explained.
We …