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hello~!
I would like to gain some insight into your decision to switch from the Audic and Claverie test to the DESeq2/GLM approach, for >= 3 replicates.
if I am not mistaken, until recently the…
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I noticed when an interpro domain is not found for an interproscan hit, it's still added to the dbxref list as '-'. This is easy enough to 'sed' out of the gff but wanted to report it anyway. I also d…
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hello!
Quick question:
I started a run ( a few hours in) and realized that I want to try out the following tags, based on this segment from the documents.
`In addition, the --mod-map-base-conv…
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Tested the gene/product linkouts on Wikipathways
- [x] Affymetrix - log in required - is that intended, shall we keep that?
- [x] Agilent, Illumina - not a link, just a number - is that intended?
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Use this form to register a new ontology with the OBO Foundry.
Please read the instructions provided here:
http://obofoundry.org/docs/NewOntologyRegistrationInstructions.html
Requesting inclusio…
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In particular, we need pictures of the "first-generation" individuals that trip people up.
**Edit:** see below; this issue has evolved from the initial intention.
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Column 5 of the following BED files are not valid: `nCoV-2019.scheme.bed` and `nCoV-2019.bed`. Column 5 is supposed to be an integer score in the interval [0,1000]. As such, doing things like converti…
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Hi,
First of all, thanks for developing and maintaining this repo!
I'm using Basenji and have a set of test predictions, which I want to map back to the chromosome/start/stop positions of the se…
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I use the "Name" attribute for secondaryIdentifier, which I merge on, so this matters in the mine loads.
Glycine_max/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.gene_models_main.gff3
```
glyma.…
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Wondering if you could make a conversion script from YAML to VCF? It would be useful for things like genome browsers and standard software. If not, would you accept a pull request from me or someone…