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from @bryanlaraway I see requests for citations and/or acknowledgements. We should probably add these to the dataset descriptions.
@micheldumontier @cmungall @mbrush please comment on what propertie…
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Hi,
thanks for this great work.
I tried to reproduce the results using the README instructions. However I got this error.
`NameError: name 'picard' is not defined`
Here what I have done (afte…
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Some aspects of species and genomes can be simulated in slim that are not captured in msprime, but it would still be reasonable to simulate the species in both simulators.
A concrete example we hav…
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I am writing this post to suggest a neat new feature that could be added to this module: the addition of variety through simple genetics.
Currently, plants in the SimpleFarming module have very fix…
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I’m looking at using the VariantValidator API to retrieve gene data to be consumed by an external tool or service (i.e genome browser software). The tool I have in mind is JBrowse, but the data should…
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Hi, I am working on a large scale genomics study of 1000+ taxa and are looking to use genome-properties as a great overview tool for metabolic and other insights. We have Interproscan run on our datas…
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see https://software.broadinstitute.org/software/igv/configuring_genome_server for how these go
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Hi,
Thanks for developing this nice tool. I have met a problem, the read strand is different between .read_assignments.tsv and bam file, this leads to novel gene identification (antisense), but it …
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Milos and all;
I've been testing the 1.0.3 release with the fixed permissions issues for #325 -- thank you for these -- and am running into an issue with relative file paths in the input json. Using …
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The genome-nexus-vep supports retrieving VEP annotations by a list of variants in **ENSEMBL region** format only.
There is no endpoint to do it by a list of variants in **hgvs** format at the moment.…