-
Hello there,
I encountered an error while running PAGA analysis:
######PAGA analysis#######
pancreas_sub
-
hi, Chi,
I did the PCA, but I do not how to extract the contrib of variable ,such as pca_var$contrib in vegan package.
t1
-
Hi, we got a report in:
Today, I found a bug in Metfamily devel. In the PCA, when I selected only for certain groups, the samples that showed up were not consistent between the panel on the left righ…
-
Good day!
Could you please specify if there is any pipeline where rMATS could be used for comparison of several groups with one condition? I'm a new in AS analysis and have the issue to compare AS ev…
-
Hi all,
Currently running into some difficulty generating metacell groupings. I am working with a relatively small single-cell dataset (dim = 23684 x 3515), but did not expect to run into this muc…
-
Add stuff:
- [x] plot ly plots for the svg ones
- [x] add more report data (versions, input files etc)
- [x] ion injection time violin plots per fraction
- [ ] PCA on BOTH sets and groups when h…
-
**Dear MILOlab**,
when I try to **_convert my adata_sp object to SPATA2_**, some errors occur below
```{r}
spata_object
```
thanks!
-
Hi,
I have some libraries of scRNA-seq, and run hdWGCNA as below:
```{r}
scRNA
-
Get an error that n samples in sample_group and datafile are different when they are not:
```R
unload('smartsnp')
remove.packages('smartsnp')
pacman::p_load('smartsnp','data.table','ggplot2',…
-
Hello,
I'm using ade4 and dudi.pca to do my analysis.
When I do a plot of individuals, with ellipses of my four groups, then this works fine :
fviz_pca_ind(pc2,
col.ind = datpca$…