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lehtiolab
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ddamsproteomics
A Nextflow MS DDA proteomics pipeline
MIT License
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5
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sampletable order is important in DEqMS
#33
glormph
opened
4 months ago
0
Version 2.18 release
#32
glormph
closed
4 months ago
0
Setnames/groupnames cannot be too similar for then the "add sample group to header" regex fails
#31
glormph
closed
4 months ago
1
Add `-Xmx` to dinosaur process to increase heap size
#30
glormph
closed
4 months ago
0
make possible to exclude specific channels for summarized quant
#29
glormph
opened
9 months ago
0
QC improvements
#28
glormph
opened
9 months ago
1
msgf2pin does not use not all PSMs in a run
#27
glormph
closed
6 months ago
1
Enforce concatenated search for percolator
#26
glormph
closed
8 months ago
0
Make possible to accept correction matrix for isobaric quant
#25
glormph
opened
11 months ago
1
Unify pgt and dda mzmldef
#24
glormph
closed
8 months ago
0
setname mismatch between total proteome/PTM search should be reported as error
#23
glormph
opened
11 months ago
0
Create formalized tests
#22
glormph
opened
11 months ago
1
Coming release 2.16
#21
glormph
closed
11 months ago
1
Version 2.15
#20
glormph
closed
12 months ago
0
Removal of target-matching decoy peptides skews database
#19
glormph
closed
12 months ago
1
Release 2.14
#18
glormph
closed
1 year ago
0
off by one error in PTM protein location
#17
glormph
closed
1 year ago
0
Improve readability of `usage.md` documentation
#16
kamurani
opened
1 year ago
0
Release 2.12 WIP
#15
glormph
closed
1 year ago
0
Add tmt18 pro when openms has it
#14
glormph
closed
1 year ago
0
docker hub shutdown - use biocontainers instead
#13
glormph
closed
1 year ago
2
Pipeline reruns crash on file exists (trace)
#12
glormph
closed
1 year ago
0
setMerge doesnt cache on resume
#11
glormph
opened
1 year ago
0
Update status code for retries
#10
glormph
closed
1 year ago
0
Investigate and document difference PTM and peptide tables
#9
glormph
closed
1 year ago
1
Investigate and document PTM peptides / peptides dis
#8
glormph
closed
1 year ago
1
Investigate and document missing sets in PTM peptide table
#7
glormph
closed
1 year ago
1
Isobaric prec.purity calc for TIMS needs newer pwiz version
#6
glormph
closed
1 year ago
0
Create user-defined column(s) with flags for occurance of particular protein type, contaminant etc
#5
glormph
closed
8 months ago
0
PR version 1.4
#4
glormph
closed
4 years ago
0
Version 1.3 coming up
#3
glormph
closed
4 years ago
0
Release 1.2 coming up
#2
glormph
closed
4 years ago
0
about to release 1.2
#1
glormph
closed
4 years ago
0