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Identify Medicago GWAS datasets and publications available (with Joann Mudge and P. Tiffin)
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We run the gwas based on our WGS dataset ,so no imputation ,no INFO value. So is there no need to run the Quality Control of GWAS summary statistics?
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datasets /var/folders/l9/bl9qs09j6nn7q514r12f2z140000gn/T//RtmpXqi45h/ebi-a-GCST90027158.vcf.gz
Downloading with download.file.
trying URL 'https://gwas.mrcieu.ac.uk/files/ebi-a-GCST90027158/ebi-a-…
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Hi, thanks for your interesting tool!
I have been using cTWAS on a few datasets, and have got interesting results.
Overall, I have been able to run most parts of the analysis relatively smoothly.…
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How does GWAS-SSF handle eQTL or other QTL datasets (which are multi-trait GWAS)? One sumstats and one metadata file for each gene/molecular feature?
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The [Trait Association Search page](https://dev.soybase.org/tools/search/trait.html) (implemented currently at dev.soybase.org; soon also I expect at peanutbase and legumeinfo) returns GWAS and QTL st…
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This is a new iteration of the data, making #3567 obsolete:
```
❯ gsutil ls gs://ot_orchestration/releases/24.10_freeze2/
gs://ot_orchestration/releases/24.10_freeze2/locus_to_gene_gold_standard.json…
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Hi! Thanks for the great approach! I have two GWAS summary datasets and I want to do co-localization analysis on these two GWAS datasets using significant SNPs. Can echolocatoR achieve this goal?
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NBDCヒトデータベースにおけるdatasetの定義を確認する必要がある。またjga-studyとjga-datasetなど同一データベースにおける異なるID体型が混在しているので、方針を確認する。
例）
* JGAS000585
* JGAS000585 (Data addition)
* JGAD000687
* E-GEAD-635
* DRA016800
* hum035…
tfuji updated
2 months ago
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Similar to the work on variant index (#3350), we would like to serve a `gwas_study_index` dataset through OS + API.
This dataset is created by different upstream ETL processes ([gentropy](https://g…