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Hi,
I was wondering if it is possible to include an argument in kmer-db that allows the inclusion of non-canonical k-mers in the construction and querying of databases. Thus far I have been using a m…
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In the USA, mortgage-backed securities trading is made practical by a corporation called [MERS: Mortgage Electronic Registration Systems, Inc.](https://scholarship.law.wm.edu/cgi/viewcontent.cgi?https…
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Hi,
We try to list all possible kmers from a pair of fastq files using:
```
kmc \
-k31 -m128 -ci1 -cs4294967295 -cx1e13 -t36 \
-jOutput.json \
@files.lst \
test.kmer.output \
`pwd`/kmc…
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Hi , I followed the guide strictly, but I get this error, I don't know what's causing it? Thank you!
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Hello,
As there is nothing mentioned in the manual or other issues, can you please share with me your experiences when running kraken2 on ONT reads.
What is the best kmer-length, the minimizer len…
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- [x] MSV000083535
- [ ] MSV000083534
- [x] MSV000083533
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I have an RNA seq that I need to assemble from PacBio and when I send the script the program do not pass the stage 2. I work with PACbio long read Hifi sequence that end up being all around 12 mil…
A-pcd updated
3 weeks ago
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My database contains lots of genomes, over 15k bacterial and all fungi from genbank, so it is unlikely for a result with 0 overlap. Also I had already run Clark and Kaiju and both return good results.…
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Hi @yoshihikosuzuki ,
I am using ClassPro like this:
`$ ClassPro -v -T16 -NResults/13_profile_reads/Profile_17_mers -r7000 Results/11_preprocess_fastq/My_file.fastq.gz`
And get this output:
```
…
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Hello,
I've got a question regarding the argument `--maxaccepts` of the `vsearch` command `--cluster_fast`:
The manpage states the following about `maxaccepts`:
"_The search process sorts tar…