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Hello,
I wonder if the method to detect SFS strings could be applied to other highly accurate datasets such as unitigs created from Illumina reads (e.g. PE, 2x150 bp, 500 bp insert size). In the prep…
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Hi,
Do you have any plans to produce a GFA output instead of a Fasta? it would be a natural way to represent the full graph with adjacency information betw unitigs
Thanks
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If I give themisto-build a file with just a sequence and its reverse complement, extract-unitigs is generating two different unitigs -- is this the expected behavior?
e.g. if 80.fna contains
```
…
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The following Canu unitigs GFA file causes `gfaview` to segfault.
```
❯❯❯ gfaview canu.unitigs.gfa
[5] 14685 segmentation fault
```
Using revision 2faeed2953399102e8bb22f5aa833c8f900a7587 of 2…
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While my original gfa file has sequences in it, but `asm -u` command results in a gfa having * for all the segments.
Is there an option to produce the unitig graph with sequences?
snurk updated
4 years ago
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Hello,
I'm trying to curate the assembly produced by hifiasm by reassembling the reads at the assembly tips with different parameters and assemblers. This would be bit more efficient if I could edi…
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Hi! I'm encountering an issue with Trans-Abyss that appears to be a problem in the code. When executing the abyss-filtergraph command, it seems that too many arguments are being passed to the function…
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Hi @bgruening , @druvus , @zachcp , @lecorguille , @corburn , @jashapiro , @johanneskoester , @lrvdijk ,
I used canu 1.7.1
```
> conda activate canu171
(canu171) l> canu -version
Canu 1.7.1
``…
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Dear masurca developpers, dear all
First of all, thank you very much for developing this very nice suite, very usefull for the community :)
I encounter a very long lag time of more that 15 days at t…
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I'm trying to perform RNA velocity with kallisto, bustools and their wrapper kb-python following the instructions in [this R Notebook](https://bustools.github.io/BUS_notebooks_R/velocity.html). But I'…