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### Context
https://github.com/AlexsLemonade/refinebio/pull/2844#issuecomment-885836634
### Problem
In the Illumina processor we have made some decisions that end-users should know about when t…
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(a.k.a custom hints or custom requirements)
- [ ] Seven Bridge
- [ ] main: https://github.com/rabix/bunny/wiki/CWL-draft-2-extensions
- [ ] https://docs.sevenbridges.com/docs/list-of-executio…
mr-c updated
10 months ago
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I am currently using minfi to analyse my DNA methylation data from Illumina EPIC v2.0. And, I get the following error when I run preprocessIllumina:
```
Error in h(simpleError(msg, call)) :
erro…
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Hi,
I am trying to utilize seqtk in order to convert quality score encoding of raw FASTQ files from illumina 1.5 to Sanger / illumina 1.9
my command line was:
seqtk seq -VQ64 inputfile-illumina1.5…
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Hi Alex,
`star-2.7.9a`
It appears that `--readFilesManifest` does not like a mix of single and paired reads. If I run using a manifest of all of one type it works fine. Below is what my manifest loo…
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Processed fine but platform is incorrect (Illumina MiSeq not Illumina). Raises no error but fails EBI submission....(study ID 1696)
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[SeqPrep](https://github.com/jstjohn/SeqPrep) merges overlapping paired-end fastq files. It bumps up quality scores in overlapping scores accordingly (i.e. two agreeing bases with Q30 result in a Q60 …
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a list of open and closed To-Dos:
**recover these files from old backups/ reprocess broken files**
- [x] transfer our Backup from NAS to the HCP, extract it and replace the below-listed file of …
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In `seq_receive_library_pools.py`, newly created libraries for ingested pools do not belong to an experiment, and thus do not belong to a project. So when it comes time to generate the Illumina Runshe…
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Illumina JS:
https://github.com/umccr/illumination/blob/master/utils/illumina.js#L8
See: https://ica-docs.readme.io/reference#accounts