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Hi,
Thank you for developing this tool! I've been using EarlGrey for some plant genomes and encountered an issue.
I successfully ran it on a smaller genome (~500MB), but on September 19th, I sta…
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Would you be able to recommend an efficient way to add a few genomes to the existing MIDAS database that is available for download? I've followed the steps to create a new database for my additional g…
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Hi,
I hope all is well. I have cell-specific open chromatin regions that I'm trying to run S-LDSC with. The problem is that the annotations resulting from these files are very small and don't cover…
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![Error II](https://github.com/SouthGreenPlatform/PanExplorer_workflow/assets/92165316/af2264de-834b-4940-acd3-f835a9609a19)
![Error I](https://github.com/SouthGreenPlatform/PanExplorer_workflow/asse…
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[M::adjust_utg_by_primary] primary contig coverage range: [59, infinity]
Writing sd.bp.p_ctg.gfa to disk...
[M::reduce_hamming_error_adv::2.146] # inserted edges: 3262, # fixed bubbles: 110
[M::ad…
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Hi,
Thanks for the tool!
Can I use it on a very large data, like 300K-400K genomes (reads & assemblies)
Best,
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Need to add:
**active**
- [ ] SenNet CODCC (PI: Jonathan Silverstein) (role: Co-Investigator)
- [ ] KPMP KMAP (PI: Matthias Kretzler) (role: Co-Investigator)
- [ ] 4DN Center 3D Genome Structure…
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Hi,
I have been using minimap2 for many genome to genome alignments and I have noticed an odd pattern.
If I take a large genome like a human genome and align (paf output) the whole chromosomes …
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Dear all:
I want to identify variation between two similar genome, but when I use Mummer4 it use almost more than 1000Gb RAM, our linux server can't run with it, the larger one genome size is abo…
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Hello Dr. Guan,
We have a large heterozygous genome file (1.6 Gbp), constructed using pacbio ccs reads, with 87% duplicated busco genes. Using cytology, the haploid genome size estimate of this or…