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Hi @sirselim, thank you for your tutorial. I was able to have guppy 5.0.11 shown in the nvidia-smi output. However, when I was trying basecalling in the minKNOW UI, it did not fire up, and util I plug…
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Hello,
I'm working on mutational signature analysis (I also put a picture down here), so I'm wondering if we can get these two kinds of data from megalodon: 1) exact total number of SNPs in each sa…
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Hi,
When I go through the steps,
$ git clone --recursive https://github.com/jts/nanopolish.git
$cd nanopolish
$ make
I get the error: make
Makefile:109: .depend: No such file or directory…
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# 生信爱好者周刊(第 4 期):生信有一天可以得诺贝尔奖吗
这里记录每周值得分享的生信相关内容,周日发布。
本杂志开源(GitHub: [ShixiangWang/weekly](https://github.com/ShixiangWang/weekly)),欢迎提交 issue,投稿或推荐生信相关内容。
GitHub 粉们可以通过 Watch 仓库的 Release(提前)…
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Hi. Thank you for developing such a nice program.
Regarding the minimum read length (which is by default 10000), I was wondering if it leads to losing many reads in my data as for many of my sample…
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Hello, I'm trying to use Canu on multiple fastq files using PBS/Torque '6.1.3':
```bash
canu useGrid=true gridOptions='-l walltime=72:00:00 -A llp_lbeg' -p coral -d /staging/leuven/stg_00026/Coral-D…
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Hi,
I got this error while running command **SqueezeMeta.pl -m merged -p nanopore_WGM_run -s /home/hamlab/Nanopore/WGM/sample_file -f /home/hamlab/Nanopore/WGM --minion** for minion reads analysis
T…
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Hi!
I'm trying to use RASFlow for first time with ONT Minion (with master branch), after align step with HISAT2 no reads are aligned. I also tried bwa branch but there are some tokens errors so th…
ghost updated
3 years ago
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Dear Jody,
we are looking into sequencing MTB cultures with Nanopore, first with the MinION and possibly later with the Flongle.
I saw that in your 2019 paper, that you used the SQK-LWB001 kit f…
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Hi, I'm running TGS-GapCloser for gap closing of human genome assembly. The TGS I used is Oxford Nanopore Ultralong read 10X coverage, with read correction by pilon, my full command is:
```
TGS-Ga…