-
Hi,
I have already successfully build custom databases but for some reason, I got an error at step 5 with the following command :
kraken-build --threads 40 --build --db ~/kraken_customdb
Krake…
-
Hi,
I have some viruses mapped to strain level. While krona successfully grouped the taxID and displayed up to species level, I'm hoping to see the charts displayed in more detail.
Can this be implem…
-
**Describe the bug**
When a file path has "weird" characters like `|` in it, mashtree fails.
**To Reproduce**
Here is an example of my file of filenames
```
mycobacteria/Mycolicibacillus/kr…
-
Hello!
Per these option details, I was trying to output a singular (top?) taxid and ssciname
_staxids Unique Subject Taxonomy ID(s), separated by a ’;’ (in numerical order). This field requires sett…
-
Hi,
Would it be possible to get an output that is similar to blastp default output? I am running another program that parses the blastp default output to get top hits.
Here is the example of blast…
-
I run kraken2.1.2 (github version) to build a database, at the last step it's stuck. The message "CHT created with 22 bits reserved for taxid." was kept for several days. Here is my command
```krake…
-
This is one component of #375
I haven't tested the NMDC Sample Metadata Template parser on these `plant` associated slots yet
- host_common_name
- host_taxid
- plant_struc
-
Hello,
I have this error when i run taxonomy_lookup_embeded.pl
DBD::SQLite::db selectrow_arrayref failed: no such table: gi_taxid at ./taxonomy_lookup_embeded.pl
Have you an idea to fix the problem …
-
When typing `pombe` in the species - taxon ID input field, several other sources appear (e.g. "Schizosaccharomyces pombe expression vector pDUAL2-HFG1c - 477364"). When selecting this, the following e…
-
**Background**
For implementation of #381 NGB server shall provide an API to get list of organisms along with `taxids`
**Approach**
NGB server shall provide an API method to search for organisms …