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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/guldenolgun/NoRCE
Confirm the following by editin…
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- [ ] **Input**: (specific taxonomy - species - to be download) or all the species from ENSEMBL. A folder where the files will be download.
- [ ] **Output**: The canonical FASTA file for the speci…
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@cschu @gemygk
I would like to get your views on adding rules for BUSCO, running against the genome, final output files and running against the prepare output then creating an external metric based …
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Hello,
I puzzled that seekr are available for the ncRNAs that are short than 200nt? And, in the literature you published, seekr were only applied for classing the function of lncRNAs.
Best,
…
Ci-TJ updated
5 years ago
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Back in 2015 these terms were requested(#299 ):
Transposable_element_pseudogene (SO:0001897)
and
transposable_element_CDS (SO:0001896)
Do you think it would be appropriate to have:
transpo…
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overall normalization/scaling needs to done after background subtraction.
Here are two approaches:
> Reactivities were normalized within each probing condition to the mean
of the 92-98th perce…
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### Context
We have been running a bunch of Surveyor jobs.
### Problem or idea
Looking at the DB logs and noticed we have a few of the following errors:
```
2019-08-14 15:00:17 UTC:10.0.7…
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Hi,
I'm wondering whether GO:0035068 micro-ribonucleoprotein complex
Def: A complex containing both protein and micro-RNA (miRNA) molecules. miRNAs are approximately 22 nucleotide noncoding RNAs der…
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Are there any config changes we can make to allow IPI for non-protein substrates?
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When making a gene model from a full length RNASeq read, indels seem to be being interpreted as introns. Eg, when making annotations from the top two reads here:
![screen shot 2019-03-01 at 10 16 2…