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Hi,
I'm using Ubuntu 16.04 LTS on virtualbox. I got the following error when running marginAlign for Nanopore reads.
> ---JOBTREE SLAVE OUTPUT LOG---
> Traceback (most recent call last):
> …
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I've been having a bit of trouble running the `all_qc_summary` target.
It seems that the `make_sample_qc_summary` rule makes a few assumptions about filenames that aren't connected to the `config.y…
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Heya, how about https://www.nature.com/articles/s41467-019-09637-5?
It is an indirect comparison to short read sequencing through the evaluation of SNP calling quality.
From the paper:
> Abst…
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Peter, at the Oxford Nanopore meeting in London last week a group gave a talk about using Kaiju offline on a polar expedition. Intrigued and lazy, I thought I'd give the Kaiju webserver a try with m…
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Hello all,
I am having an issue with Canu 1.9 running in a VirtualBox on a Windows 10 machine. These reads are from a minION sequencer on a 30m genome with a lot of coverage, over 600x. I am tryi…
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Hello,
I’m a beginner in this field and I had some questions about taiyaki. I would really appreciate if you could help me out.
1. What is the main purpose of taiyaki? If it is just to basecall…
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Dear,
Canu is designed to be universal on a large range of PacBio (C2, P4-C2, P5-C3, P6-C4) and Oxford Nanopore (R6 through R9) data. And, SqueezeMeat uses Canu for assembly of the long, error-prone …
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Hi Alex, Matt & team,
We have a miniT that runs our minion and inspired by https://github.com/LooseLab/ru/issues/28 I had a go at installing and running ru on it. It works, right up to the basecalli…
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Hello,
I'm trying to assemble the reads from nanopore sequenced wgs for just a 200kb region and am using Canu release v2.0 running on my Universities HPC system.
This is the canu command I used:…
smf96 updated
3 years ago
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Dear Michael,
Hope all well.
I'e just tried to install the latest version of DNAScent and ran into the following attached error.
Kind regards,
John
[make.log.txt](https://github.com/MBoe…