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# General thread to talk and solve Dockerfile issues
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I just wanted to give the pipeline a try here at the EBI server structure using Singularity and LSF to schedule jobs. I made a new branch and added the following profile to the configuration to get it…
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# Nextflow commandline
`nextflow run nf-core/rnaseq -profile test,singularity -c my.config`
where all my.config does is set singularity.autoMounts to true, bc we originally thought it might be a pro…
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Hi, I met this issue as follows.
```
clldebian10@clldebian10:~$ ./nextflow run nf-core/ampliseq -r 1.1.0 -profile docker --reads '/mnt/weinfo/users/cailiangliang/data/16srna20190531/' \
> --FW_prim…
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```
Aug-09 02:25:52.700 [Task monitor] ERROR nextflow.processor.TaskProcessor - Erro
r executing process > 'Run_LncPipeReporter (Generating report ...)'
Caused by:
Process `Run_ #LncPipeReport…
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Figure out with Sinisa about Docker file and hosting of Docker images @ionox0
1. Using Existing Docker images
2. Creating new Docker images and hosting them on DockerHub
3. Which repo should the …
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When running `nextflow run nf-core/rnaseq -profile singularity` I get the following error message:
```
Pulling Singularity image docker://nf-core/rnaseq [cache /home-Pharnext/data/alex/rnaseq/wor…
ghost updated
5 years ago
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We've identified a malicious user, and have taken Singularity Hub down until further notice. All containers and collections are safe, and this post (and Twitter) will be updated with further informati…
vsoch updated
5 years ago
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Hi, there,
I'm trying to use nextflow docker container from https://hub.docker.com/r/nextflow/nextflow (I tried many versions starting from 18.10.1).
Using docker2singularity, I got the `.img`…
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1. I install according to this link: https://rawcdn.githack.com/aertslab/SCENIC/a0a00644b2f3589a3e2bc65486fc5f6cc00f48e1/inst/doc/SCENIC_Setup.html#sample-dataset-download-format
and run according t…