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Hi Iñigo,
I was performing the Circle-Map Realign tutorial, and encountered a few warnings.
My command:
```
Circle-Map Realign -t 4 -i sort_circular_read_candidates.bam -qbam qname_unkno…
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Hello Rosella team,
I notice that hdbscan also replies on python but actually there is a beautiful rust implementation (https://github.com/petabi/petal-clustering) and is paralleled when necessary.…
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Hi,
I'm trying to use MIDAS-strains but I have got the following error:
```
Traceback (most recent call last):
File "/home/namel/scripts/MIDAS_strain/MIDAS-strains/midas_strains.py", line 179,…
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One of the problematic data sets is analysed here:
/mnt/gpfs/Hackathon/StrainMetaSim/CoAssembly55
The binning is very poor prior to merging. Just 9 good bins at 75% completeness. See file:
cl…
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## Expected Behavior
`mmseqs easy-linclust` executes with flag `--min-seq-id`
## Current Behavior
`mmseqs easy-linclust` throws error `Error in argument --min-seq-id` when given flag `--min-seq-i…
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Hello!
I am trying to run your pipeline following your examples to create snap files but had a few errors:
1) When running the **index-genome** and the **align-paired-end** commands, I had tab/sp…
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Thanks for a great tool and for being on top of open issues - this helped with a lot of trouble shooting.
I now get to an issue I cannot resolve.
I'm running Souporcell with known genotypes:
`/usr/…
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Small question on your API. Adding minhashes in a custom (e.g. duck-tapped) genome sqlite database, my sequences seam to have non-standard bases (not ATGC, like N, K,R and so on) I know that your stan…
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Hi,
I'm new to using the bacLIFE pipeline for analyzing genomes. I've been encountering various issues, including errors during the big_scape, EGGnog, and antismash steps.
After trying to troubl…
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I'd like to run MetaEuk on hundreds of eukaryotic genome assemblies using AWS but the cost for writing to disk on EFS is extremely expensive. The alternative is to use an s3 bucket for temporary stor…