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Hello,
I'm trying to assemble the reads from nanopore sequenced wgs for just a 200kb region and am using Canu release v2.0 running on my Universities HPC system.
This is the canu command I used:…
smf96 updated
4 years ago
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Dear Michael,
Hope all well.
I'e just tried to install the latest version of DNAScent and ran into the following attached error.
Kind regards,
John
[make.log.txt](https://github.com/MBoe…
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`sortmerna --ref /slipstream/home/LauraF/assemblers/sortmerna-2.1b/rRNA_databases/silva-bac-16s-id90.fasta,/slipstream/home/LauraF/assemblers/sortmerna-2.1b/indexdb_rna.1 --reads my_file.fasta --align…
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Hello, I just read your preprint. Great stuff. I was wondering: do we need a Nanopore device with an integrated GPU, or can we use a MinION that is attached to a machine with a GPU (we have one with 2…
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I ran minion_qc on 2 promethion runs (I know - it's named **minion**_qc) and got incomplete results in the summary.yaml, reporting approx only 10% of the reads.
I did not get any error messages and t…
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when running
```
python chiron/utils/raw.py --input /mnt/tertiary/nanopore_YFT --output testxport --mode dna
```
on straight-from-sequencing fast5 files, output is:
```
Raw data is not stored …
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Hello,
I've noticed a difference in the Q scores when I run NanoPlot with a BAM alignment input vs. a sequencing_summary.txt file from Guppy. I used the same samples as input, so i expected the qua…
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Is it possible to modify nextflow options to accept --port and use a GPU installed on another node on cluster?
I tried local install in my directory on cluster where I installed master of pores, g…
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In our latest run, we noticed that read until script stopped with the following message :
```2020-04-13 11:18:33,073 Manager Sending reset
2020-04-13 11:18:33,073 read_until_api_v2.main Reset reque…
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/SqueezeMeta/scripts/SqueezeMeta.pl -m Sequential -s test.samples -f raw/ --minion
SqueezeMeta v1.0.0 - (c) J. Tamames, F. Puente-Sánchez CNB-CSIC, Madrid, SPAIN
Please cite: Tamames & Puente-Sa…