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Hi,
There must be something wrong with my input file since the test data run successfully.
Attached the error report here.
Running GEMMA
Phenotypes to analyze: urological_ageing
Creating …
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https://beta.monarchinitiative.org/disease/MONDO:0005249#phenotype
Users will interpret pneumonia as the disease pneumonia. However, the page is subsuming phenotypes from all of the subclasses of t…
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Apart from phenotypic abnormalities, ZFIN curates ameliorated and excacerbated phenotypes. These phenotypes are special in two senses
- they follow a simple pattern: biological attribute (tail length…
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1) Phenotypes can be observed/measured, or inferred from data (e.g. genomic sequence data). If inferred, there is a degree of uncertainty as to whether the expected phenotype will actually inhere in t…
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Right now we call the same service to get a list of phenotypes for both Phenogrid and the annotation sufficiency score service. We need to refactor so that this information is reused.
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When looking at a disease page with very many phenotypes, it might be nice to see an overview of their distribution in different anatomical categories and/or be able to filter on these.
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When providing a set of phenotypes to be analyzed, an annotation sufficiency meter would be helpful for showing users the quality of their annotations.
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We currently have confusing scenarios like this one we need species-specific configuration.
1) Is there any scenario in which there would be more than one species in the phenotype profile? I can't …
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Engase KO rescues phenotype of Ngly1 KO, http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1006696
we don't have this in Monarch
https://monarchinitiative.org/genotype/MGI:5896…