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Dear all
I ran the following command:
```bash
ENRICHM_DB=/directory_to/enrichm_database
enrichm annotate --output /current directory/output_annotate_ko --ko_hmm --genome_directory /current_d…
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Hi,
Thank you for the tool. I'm trying to run it on a single sample and get the following error. I've posted the full log below:
```
== Starting run at Wed Feb 10 21:16:26 CET 2021
[1] "Working i…
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I'm working on an institute-wide pipeline for JCVI and had some trouble running your tool.
Here's my version installed via pip:
```
viral_verify --version
viral_verify, version 0.1.1
```
…
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Hello,
When I use METABOLIC/METABOLIC-C.2nd_run.pl, I get the following error message. File "All_gene_collections_mapped.depth.217pc.txt " and "MW-score_result.txt" are empty. Looking forward to you…
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Hi Mike,
Thank you for Cenote-Taker2! However, I am facing a problem when i run the commond:
`python ~/miniconda3/bin/Cenote-Taker2/run_cenote-taker2.py -c ~/hxj/depth_analysis/raw_data_2/contig_meg…
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Hi! I was trying to run Padloc on my FAA/GFF file combo from a phage genome (both are outputs from Multiphate2 with ORFs predicted by Phanotate). Padloc failed with the error message
`ERROR >> 3 pr…
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Hi,
I've recently installed METABOLIC using mamba in conda env according to the instructions. When I tried running the command with the test data, I got some errors that I assume are perl-related.
…
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Description
When I attempt to run the command pgcgap --setup-COGdb, I encounter the following error message:
Duplicate specification "G=i" for option "g"
roary not in $PATH and binary not specifi…
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There are multiple taxids in my output of diamond blastp.
For example, here is the blastp result of two proteins. The last column represents taxids.
contig1_28 SCI95225.1 100 136 0 …
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Hi there,
Could you please walk me through how to use this tool? I'm working on Mac Catalina and just installed perl.
Should I copy/paste the perl script into my terminal? Do I need to pre-dow…