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Hello everybody,
I'm analysing the bacteria community (16S region) for 189 samples. I followed the [Workflow for Microbiome Data](https://bioconductor.org/help/course-materials/2017/BioC2017/Day1/Wor…
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Hi,
currently check contains NOTES. Especially it seems that syntax of list in roxygen has changed.
1. Run devtools::check()
2. List probelmatic things to this issue
3. Let's discuss what we c…
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Our workflow is described here: https://github.com/cuttlefishh/tourmaline
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Hello,
I've found that I was able to get TaxUMAP to work by specifying filenames to the `Taxumap` function, but providing them as dataframes didn't seem to work.
Here is a screenshot of what por…
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**Snakemake version**
Version 6.3.0
**Describe the bug**
When executing a Snakemake workflow using google life sciences executor, the first few jobs go through and then I get an SSL error. The …
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Hello everyone,
This is my first commit and although I have been searching for answers around the web, I do apologize if this is redundant!
From preliminary 16s microbiome relative abundance dat…
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Hello,
I'm currently working on data preprocessing from multiple Illumina runs.
The first run was sequencend using a v2 kit, while the other runs used v3, which gives me different amplicon sizes (…
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Hi team
This is a powerful package and your up-to-date tutorial is very helpful.
I was wondering if you could help with the downstream analysis for functional diversity? https://github.com/gavinm…
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Hello,
I'm following the "[Bioconductor Workflow for Microbiome Data Analysis: from raw reads to community analyses [version 2; referees: 3 approved]](https://f1000research.com/articles/5-1492/v2)"…
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### Report
Hello, I am a new user of dbcan. While running the following command:
`dbcan_utils CGC_abund -bt Bv_WXH_abund/Bv_WXH.depth.txt -i dbcan_result -a TPM
`
I encountered the following error…