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UX-wise, querying via `params`
```python
ln.Run.params.get(nextflow_id="cheesy_engelbart")
```
seems better than querying via `reference` and `reference_type`
```python
ln.Run.get(reference="che…
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Github:
https://github.com/Rbbt-Workflows/ARGOVarCall
Awaiting Miguel for docker image.
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## Bug report
When running large workflows, the main process gets interrupted with the error `UNKNOWN: channel closed`.
### Expected behavior and actual behavior
Expected: Normal execution…
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Hello, I encountered this problem when I entered the code. Is the file damaged?
N E X T F L O W ~ version 21.04.3
Not a valid project name: DEN-IM.nf
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Hi,
I basically create the yml file using a python parser. I am trying to run exomiser through Docker. All the data dependencies are copied into the docker container. I have set up the application.…
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I understand how to install and run this program with docker but how can I install and run the software without using docker on a HPC cluster which uses singularity?
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@EvaFriederike this should be straightforward now that we have a working conda-based workflow.
## Update `container.config`
There is already a `container.config`. Here, similar to the `conda.co…
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Hi there,
I was wondering how I can tell flowcraft to use my own docker, which are placed in an inhouse gitlab repository. I know, it is better to use those from flowcraft, but for some things I mi…
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## Category: Workflow Software (or new section?)
Name: If containers are used in the analysis, they should be referenced through stable version numbers
Category: "bronze"
Description: If containe…
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Hi @Ivarz,
I recently created a Docker image for conifer. I thought, I'd leave it here in case it's useful for you or someone else.
```dockerfile
# Copyright (c) 2020, Moritz E. Beber.
# Licen…