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Hi Jochem,
would be possible to enlarge dG_limits in make_dict function form {"start": 10, "end": 50} to {"start": -10, "end": 50}. I wanted to simulate the calculation of the D-uptake of a peptide…
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Hello,
I have a fasta file containing thousands of peptide sequences. I wanted to predict their 3D structures using LocalColabFold 1.5.5 installed in an HPC cluster and I have access to GPU clus…
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Hi,
I've loaded the combined_peptide.tsv and the experiment_annotation.tsv, and got the following error:
…
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Hi,
How would one process DIA data in DIA-NN from a digested lysate spiked with Heavy Lys and Arg 13C and 15N labeled protein standards?
Thanks,
Stoyan
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Hi, I did phospho analysis in Fragpipe-DIA-NN.
I see one strange thing in output file. I see that for …
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Respected Sir,
Greetings.
I, S.R. Vignesh, am a Research Scholar at the Indian Institute of Technology - Guwahati (IIT-G) working under the guidance of Dr. Priyadarshi Satpati, in computational s…
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Hello, have the designed peptides been synthesized and subsequently verified through wet lab experiments? What were the results?
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My script is this:
## import requested modules
from PANDORA import Target
from PANDORA import Pandora
from PANDORA import Database
from PANDORA import Template
#db = Database.load()
templat…