-
WIP. Create interface for peptide finding across searches
- [X] database with peptides design
- [X] front end
- [X] feedback
- [ ] implement feedback
- [x] dataset import button for at least la…
-
Is that possible to support denovo peptide sequencing using tool like Casanovo in koina?
-
Hello, I'm getting this error, can you please help me locate the source of the problem?
```2024-08-16 23:52:17 INFO ms2rescore.parse_psms // Reading PSMs from PSM file
…
-
Hi everyone
I am new to FlashFLQ and I try to use it to quantify my proteomics data. The identification was done with sage and MS2 Rescore. I tried to generate the generic table for FlashLFQ with the…
-
Hi, thank you for developing such an excellent software.
### pVACseq: Discrepancy between {sample_id}.all_epitopes.tsv and {sample_id}.fasta ?
#### Description
I have successfully run pVACse…
-
I installed localcolabfold and copied HighFold git repo into my localcolabfold.
So that my localcolabfold git repo looks as
![Screenshot 2024-06-25 at 5 29 04 PM](https://github.com/hongliangduan/…
kimdn updated
1 month ago
-
@manulera
do you know what this means?
SPBC685.02 SPBC685.02:allele-2 exo5-D176A D176A invalid_error peptide sequence missing
SPBC685.02 SPBC685.02:allele-3 exo5-D207A D207A invalid_error pept…
-
Hello, I am using this project to predict the docking pose of cyclic peptides with proteins. I am using several examples from the original paper, such as 1SFI and 3AV9. The input format is in the form…
-
Hi Bo,
I was using the standalone tool to identify/validate a novel peptide. How do I know the abundance of that peptide in different samples?
best,
Emily
-
Dear OpenFE team.
Thanks for this awesome work.
This is related to https://github.com/OpenFreeEnergy/openfe/issues/633 https://github.com/OpenFreeEnergy/openfe/issues/634 and https://github.com/Open…