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When i use the following yaml file, i get the complex structure sucessfully.
sequences:
- protein:
id: A
sequence: MNACPHSDTLTIDPMITDLAGETSRLRAAGPLTRIDLLGVPALAVTGHTLARQLLTDTRLVKDINAWSLWQ…
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Hi all
I'm interested in generating contact maps from the ESM2 attention heads as described in the following github notebook:
https://github.com/facebookresearch/esm/blob/main/examples/contact_predi…
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Hi,
Is there a way (or a flag) for having multiple PDB structures predicted for protein-protein complex with small molecule? The default is only one outout PDB given.
mtahe updated
7 months ago
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Hi,
First of all, thank you for such wonderful tool. I'm working with proteins translated from new ORFs and I predicted that the new protein interact with another protein, say for e.g. protein X. N…
anuC updated
2 months ago
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Hi all, just ran into this error on a hemichannel (6 connexin) system (same as before). I can run this prediction with ColabFold, but not with Boltz-1.
YAML Input:
```
version: 1 # Optional, def…
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Dear community,
I used braker2 and braker3 respectively to do gene prediction in a tree genome (genome size ~900Mb).
**The input data:**
- RNA-seq: RNA extracted from the leaves of the targeted…
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I've been developing a metagenomic/metatranscriptomics software suite called VEBA (https://github.com/jolespin/veba) that natively handles eukaryotic binning of metagenome-assembled genomes and exon-a…
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when multiple small molecule inputs (B, C, D...) predicted with one protein molecule result clashes between small molecules. I assume that they don't consider interactions between small molecules... i…
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Use blastx to predict protein function from amino acid sequence by comparing to other known proteins using homology and preserved domains, im pretty sure you can also install it as a module in python …
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I have successfully installed Rosettafold2NA on my workstation. My workstation has 12 CPUs and also has GPU support. The code is running with CUDA. However, the protein-RNA prediction has been running…