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These genes have had revised structures which means that they
These genes do not have signal peptides because the sequence does not match the UniProt sequence at the N-term.
https://www.pombas…
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I have successfully installed Rosettafold2NA on my workstation. My workstation has 12 CPUs and also has GPU support. The code is running with CUDA. However, the protein-RNA prediction has been running…
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I performed a docking of two proteins with water using its chemical formula 'H2O' [assigned Copies 500], but no water molecules appeared in the output PDB file when viewed with PyMOL. Could there be a…
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I would like to know how the train.lmdb and valid.lmdb files in the docking_v2/protein_ligand_binding_pose_prediction_v2 directory were processed from the MOAD dataset. I have checked the code and fou…
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## 論文リンク
https://www.nature.com/articles/s41586-021-03819-2
(Supplementary Information も同ページにリンクがある)
## 公開日(yyyy/mm/dd)
2021/07/15
## 概要
タンパク質の構造予測コンペである CASP14 において他チームを圧倒した精度を達成した AlphaFol…
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Use blastx to predict protein function from amino acid sequence by comparing to other known proteins using homology and preserved domains, im pretty sure you can also install it as a module in python …
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I recently used RFAA protein_sm prediction, but it is very slow on our HPC (depend on protein size, the running time can be range from 15~90 minutes). Also, it met GPU OOMs for large protein system.
…
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Hey!
First of all thank you very much for providing MutateX and also RosettaDDG prediction! I am using RosettaDDG prediction to refine upon my predictions from MutateX and i want to use MutateX for p…
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Hi.
I am running topcons2 using singularity; most proteins get predicted, but some are not.
An example of the error file is attached.
I am not sure what is wrong.
Thanks.
Petro.
[error.zip](h…
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I was able to finish running the example prediction (rf2na.sh, ../run_RF2NA.sh rna_pred rna_binding_protein.fa R:RNA.fa) with no error messages after compilation. However, I did notice that there is n…