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Since the genotype data does not need to have a header (or marker name), I assume that GV-GDT expects the user to break the data set into units for testing. So if one wants to test 20,000 genes, one w…
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On both production and beta we have nodes categorized as both genes and variants, for example:
https://scigraph-data.monarchinitiative.org/scigraph/graph/neighbors?id=MGI%3A3811864&depth=1&blankNod…
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From Max: " think it may be useful to provide the BRCA data as a genome browser track hub. It could be loaded by UCSC, Ensembl and Dalliance and allow a visual impression of the variants, relative to …
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Hi!
I want to create the mask with variants from different chromosomes (pathway-based rare variants association). I've found in one of the closed issues the GENPOS in the variants set file doesn't af…
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### Ask away!
When i run v1.3.1 without providing a reference, I see a "multiple sequence alignment" (MSA) even if there is only one plasmid in the "group".
When i run v1.3.1 and provide a full re…
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## Current State
Looking at the GAD RE data as used in the [BioBert paper][biobert] and [linked][gad-drive] to in this repo, I can't find any way of making sense of it. Specifically, **what do labe…
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If I'm in a gene and select a variant that is not in the list of prioritized variants at the left, I can still mark this as Significant, but:
1. The badge under findings only counts the variants in t…
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EID4264 has a suggested revision (27251) that has status=applied, but the EID remains in pre-revision state.
https://civicdb.org/events/genes/19/summary/variants/1466/summary/evidence/4264/talk/re…
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**Issue**
Often can't access/view data in tables efficiently and csv download not always avail. As a general rule, I think almost all users have different approaches they like to take for interrogati…