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Hi,
Is it possible to run Verkko without ONT, i.e. just HiFi + Hi-C? Is there a way to skip the GraphAlign phase?
Thanks for any help,
Larry.
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hi @alekseyzimin,
Thanks for developing this amazing tool!
I encountered an error report in runCA3 step by using slurm recently.
Error Message:
```
----------------------------------------STA…
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Im having trouble running abyss-pe within a simple loop. When I run the command outside of a loop it works fine, but when i try to loop through multiple directories to assemble paired end fastq files …
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hello,
i tried to build a themisto index with this command:
themisto build -k 31 -m 100000 --input-file data.fa --index-prefix data_index --temp-dir tmp --n-threads 32
and the software retu…
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The install_STRONG.sh scripts makes a mamba call:
mamba env create -f $STRONG_dir/conda_env.yaml &>>$LOG
When the script gets to this step, here's the error message:
warning libmamba Cache file …
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Hi! Is there a chance to make it work using Nanopore reads with UMIs?
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Hello again,
I've noticed when trying to annotated coordinates and counts simultaneously using a command such as:
`metagraph annotate -i test.dbg -o coord_count_anno --anno-filename --count-kme…
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Hi guys.
I am using minimap/miniasm to get the raw contigs by rapid assembly as preliminary step in order to perform error correction using @isovic 's [racon](https://github.com/isovic/racon).
…
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Hi Haoyu,
I get this assertion failure with both 0.19.4 and 0.19.0:
hifiasm: gfa_ut.cpp:4917: void uc_block_qse_cutoff(uint32_t, uint32_t, uc_block_t*, uint32_t*, uint32_t*): Assertion `(*nqs) >= x…
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Hello @jermp: thank you for designing this awesome data structure! We at @COMBINE-lab (tag: @rob-p) are finding SSHash very useful.
We are interested in using SSHash from within C++ codes, and were…