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We use Protein Modification ontology PSIMOD (the one with MOD: prefixes) to describe actual modifications (we use PRO to describe modified forms as annotation entities, (but we probably won't get to…
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Dear all,
To prepare the gtf file used in `rnaseqc`, I first converted the gff file to gtf file using following command,
`gffread-0.12.7.Linux_x86_64/gffread -T -o out.gtf input.gff`, however it…
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While the functions of two previously predicted glucose-6-phosphate 1-dehydrogenases have been more confidently annotated (see [Corkins et al., JCB 2017](https://www.jbc.org/article/S0021-9258(20)3436…
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# in_presence_of
Has been used in [2600 annotations](https://docs.google.com/spreadsheets/d/1G4ISzlNbNMm4NxW2LSzKngogzdSJmo4yOZEkvEtfH1k/edit?usp=sharing)
It has been proposed that this relationship …
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Hello,
Following on the Signaling workshop of the Fall 2017 (see slides here: https://docs.google.com/presentation/d/1xR6EFbRyCSwruXVeMYZtJfwWEbIr6U8zei8IwGG3OrA/edit#slide=id.g26be66c50c_0_6) and…
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Hi,
I am looking at the kbase repositories in order to run an annotation on our local server. Where can I find instructions to deploy the kbase system, including running the `rast-annotate-proteins-k…
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Eg- actin-interacting protein 2 (PMID: 15351742) includes the '2' in the annotation table, but is not reflected in the highlights of the talk and feedback pages.
Here's the annotation in the annotatio…
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* **PTHR ID & PTN node:**
PTN000122119 (PTHR11118)
* **Sequences with problematic annotation (ID + gene/protein name):**
Human RTCB and orthologs.
* **Type of Issue: Erroneous source or errone…
sjm41 updated
7 months ago
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I am having a discussion with Stan in protein2GO disputes about an annotation to
"S-adenylmethionine metabolism" to "S-adenylmethionine dependent methytransferase"
Is it correct to do this?
It…
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**Project description**
A tool that identifies AMR genes, resistance-associated point mutations, and select other classes of genes using protein annotations and/or assembled nucleotide sequences.
…