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(SubPhaser) eck@DESKTOP-ED16O0T:~/SubPhaser$ subphaser -i genome.fasta.gz -c sg.config
24-08-11 22:55:26 [WARNING] Grid computing is not available because DRMAA not installed: No module named 'drmaa'…
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Hi everyone I am new to MaSuRCA Reference guided assembly. I am using chromosome_scaffolder.sh for scaffoding. I have shared the log info, I don't know what is the error. Could you help me with this?
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Hi Zijie Jiang
Thank you so much for your help. I was able to run AutoHiC finally. However, after the run, the genome is assembled into fewer chromosomes. In my case 21 chromosomes. We should expec…
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Thanks for developing a very versatile and user-friendly package. It works very well. Nevertheless, I do have two feature requests / suggestions:
1. In `manhattan()` and `regionplot() `functions, t…
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My command is : "valor -i Klg2.bam -s peregrine.chr11.sonic -o Klg2.manual -f INV --contig_count 1"
Here are my logs:
Loading SONIC file..
SONIC Info:
Built in Thu Sep 12 02:55:39 2024
N…
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Dear Armando,
In my own data.map file, there are 1812799 SNPs on chromosome 1, out of a total of 40 chromosomes and 8495844 SNPs. Is this data not runnable?
![image](https://github.com/user-attachme…
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@alimanfoo mentioned that we now offer the possibility to plot the various WGSS analyses for whole chromosomes (and even for the whole genome) but that, because they are all drawn the same way, it is …
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### In which category is your new term request?
- [X] new_definition
- [X] existing_definition
### Preferred term label
sporophytic chromosome number
### Synonyms
_No response_
### Textual defin…
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Hi there!
I am trying to mtCojo analysis on Alzheimer's Diseases by conditioning on Small vessel disease by running this:
gcta64 \
--mbfile 1000G_EUR_Phase3.mtcojo_ref_data.txt \
--mtcojo-file…
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Thank you very much for this great tool. We have a captured Hi-C dataset and probe contains multiple regions from the same chromosome, and several other chromosomes also have captured regions. How sho…