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Hello,
Is there a way that for >=0.8.1 dorado basecallers that the appending of run-name on dorado demux fastq files be an option? I have a custom script that is identifying fastq files based off …
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Hi there,
I've been trying to run `rosella recover` with ONT reads called with the SUP model in Dorado, but I ran into some issues. I tried to use `minimap2 -x lr:hq`, which is the current recommen…
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Several new versions of Dorado have recently been made, with improvements in "dorado correct". At the same time, the code of HERRO hasn't been changing. Am I right that users should use "dorado correc…
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Dear Shian,
Nanopore now suggests using Dorado and Modkit as a replacement for Megalodon for the purpose of methylation calling using nanopore reads.
I like NanoMethViz and would like to use it …
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# Issue Report
```
$ dorado-0.5.3-linux-arm64/bin/dorado
dorado-0.5.3-linux-arm64/bin/dorado: error while loading shared libraries: libhdf5_serial.so.100: ELF load command address/offset not page…
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# Possible reasons for duplex reads' quality are low
Hello, thank you for increasing the read quality! We always observe higher read mean quality on duplex than simplex reads, especially simplex pa…
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# Issue Report
## Please describe the issue:
dorado basecaller uses the flag -o twice once for output folder and once for overlap. Output folder can only be defined using --output-dir though.
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# Issue Report
Running the latest version of dorado (0.8.2) with the dna_r10.4.1_e8.2_400bps_hac@v5.0.0 and 5mC_5hmC modifed bases, I have discovered an issue with the MM:Z tag for reads where 0 me…
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### Operating System
Other Linux (please specify below)
### Other Linux
Ubuntu 20.04.4
### Workflow Version
v1.3.0
### Workflow Execution
EPI2ME Desktop (Local)
### Other workf…
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Thank you for creating the nci-scripts to enable buttery-eel execution.
While I was testing and adapting these scripts I found that the use '--guppy_batchsize' breaks the execution when using the n…