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Features of the dataset:
- from a species with a decent reference genome that is well annotated (or at least, as well annotated as any reference, which is not very well)
- fairly small dataset, or wit…
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Hello, I am trying to align metagenomic sequences, when I run initPipeline with the following command I get the expected output:
`initPipeline -q -1 Unmapped.out.mate1 -d projectDir -i 300:800`
Pr…
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## on which platform/server? (Windows? Windows Sublinux? MacOS? Ubuntu? etc.)
Linux
## MitoZ version?
3.6
## How did you install MitoZ? (e.g. Docker, Udocker, Singularity, Conda-Pack, Conda, o…
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## The need
To annotate pan-genome genes, the user is encouraged to export from an existing pan-genome database via `anvi-get-sequences-for-gene-calls -g` and then annotate the genes via their own …
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Hi, brianjohnhaas.
I found a small problem when using PASApipeline v2.5.2 (or PASApipeline v2.5.3) via singularity to update my genome annotation.
The log remained me that **fasta** and **pasa binar…
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Thank you for the great tool! I am using MEGAHIT+VIBRANT+COBRA to get about 35 high-quality phages from each of my metagenomes after validation by CheckV. I just tested the new overlap-based assembler…
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Hi! I installed AGB via conda, and then ran my code as followed:
`agb.py -i /barcode01/flye/ --assembler=Flye -r reference.fasta`
and I got these
```
Running QUAST...
No information about …
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Dear developers of this great assembler,
I have a question concerning a weird k-mers histogram with 3 peaks for a definitely diploid fish genome. Please find the attached k-mers histogram as output…
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Hi,
I am trying to assemble three plant mitochondrial genome sequences using Novoplasty. I successfully assembled two mitochondrial genomes. But When I try to assemble the third genome sequence usi…
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### Description of bug
Hey I have been trying to run spades
This is the command i used
spades.py --only-assembler -o SPADES_OUT -1 S17_Trimmed_R1.fq.gz -1 S46_Trimmed_R1.fq.gz -1 S62_Trimmed_R1.f…